Schemas
LinkML data schemas and data model specifications
33 pages
in this section.
biotoolsSchema, EDAM Ontology, and bio.tools Registry: Research Analysis
SSSOM Tooling for the Cytognosis Scholarly KG
Skill-Tagging Ontologies — Recommendation
Linkml playbook
00 — Environment Setup
01 — LinkML in an Hour
02 — The Schema Landscape
03 — schema.org and Bioschemas → LinkML
04 — Biolink Model and Other Key LinkML Schemas
05 — UMLS and SNOMED CT
06 — BioThings: APIs, biothings_schema.py, and the Data Discovery Engine
07 — GA4GH: VRS, VA, Phenopackets, Pedigree, Beacon → LinkML
08 — SOSA / SSN → LinkML
09 — CZI CELLxGENE Schema → LinkML
10 — HDMF and NWB: schema-driven hierarchical scientific data
11 — Open Targets Platform Schemas → LinkML
12 — OpenAlex and BibTeX → LinkML
13 — Organize and Visualize Your Schemas
14 — OLS4 SSSOM: SnomedCT End-to-End
15 — BioCypher: schema-driven KG ingestion
16 — Koza and the Monarch Initiative Ecosystem
17 — BioCypher vs Monarch (Koza): a side-by-side ingest comparison
18 — Harmonizing AnnData to CELLxGENE Compliance
19 — LLMs and RAG over the Cytognosis KG
...and 3 more
Software metadata
CodeMeta & CFF Field Examples and Technical Reference
Complete Index - Research Software Metadata Standards
LinkML Schema Field Inventory for CodeRepository & Software
Quick Reference: Research Software Metadata Standards
Research Software Metadata Standards Documentation
Research Software Metadata Standards - Comprehensive Analysis
Research Summary: Software Metadata Standards Analysis